Function for general preparation of input data
Usage
extract_data(
data_community_extract,
data_age_extract,
age_uncertainty = NULL,
verbose = FALSE
)Arguments
- data_community_extract
Data.frame. Community data with species as columns and levels (samples) as rows. First column should be
sample_id(character).- data_age_extract
Data.frame with two columns:
sample_id- unique ID of each level (character)age- age of level (numeric)
- age_uncertainty
Usage of age uncertainty form Age-depth models. Either:
matrix with number of columns as number of samples. Each column is one sample, each row is one age sequence from age-depth model. Age sequence is randomly sampled from age-depth model uncertainties at the beginning of each run.
NULL- Age uncertainties are not available and, therefore, will not be used.
- verbose
DESCRIPTION. Logical. If
TRUE, function will output messages about internal processes