Diversity

Functions for estimation diversity

diversity_estimate()

Estimate diversity for community data

diversity_estimate_taxonomic()

Estimate taxonomic diversity using Hill numbers

diversity_estimate_functional()

Estimate functional diversity

diversity_estimate_phylogenetic()

Estimating phylogenetic diversity

Ordinations

Functions to fit Detrended (Canonical) Correspondence Analysis

fit_ordination()

Fit ordination

fit_ordination_dca()

Fit DCA

fit_ordination_dcca()

Fit DCCA using CANOCO

GAM modeling

Functions to fit, predict, and visualise generalized additive models (GAM) models

fit_custom_gam()

Fit custom single-term GAM model

fit_hgam()

Fit single-term hierarchical GAM model

fit_multiple_gams()

Fit multiple individual generalized additive models (GAMs)

predic_model()

Predict data from a regression model

plot_temporal_trend()

Plot temporal trend

Change-point analyses and regression partition

Functions for detection of change points in temporal patterns

regression_partition()

Partition data using regression tree

mv_regression_partition()

Multivariate regression partitioning

get_change_points()

Detect change points in a vector

get_change_points_all()

Detect change points for all columns

add_data_partition()

Add partition of data

Utility

Functions for operation with (not only) fossil pollen data

add_age_bin()

add age time bin

transfer_into_proportions()

Transform pollen data into percentages

tranform_percentage_data()

Transform pollen data using selected transformation

get_density()

Get density from a vector of numbers